CDS

Accession Number TCMCG007C59594
gbkey CDS
Protein Id XP_009118569.1
Location complement(join(44135093..44135236,44135349..44135432,44135527..44135631,44135709..44135846,44135971..44136062,44136170..44136236,44136375..44136493,44136596..44136670,44136971..44137034,44137179..44137276,44137355..44137499))
Gene LOC103843583
GeneID 103843583
Organism Brassica rapa

Protein

Length 376aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009120321.3
Definition endonuclease III homolog 2, chloroplastic isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAAGTAAAAGCTCTTATGATTCTCACCTCCTCCGCTCGAGCTTTTAGTGCTATGAATCGCCGGATGTACTCTACTCGATCCATCTCCGCAGAATCCCTAACTCTTCCTTCCGATTCCAATTCCAATTCCAATTCCAATTCAGAATCAGCCAATGGAGCTTCCGGGTCTGAGACTCGAGTATCACCTCTAAGGAGGAAAAGGCTAAAGCAAGAAGTTTTGGATTCAAGCAGTAGCCATAAAGAGATGTGTGGAGTATTGCCAGATATAGAAGATCTTTCGTACAAGAAGACAAATGTATCTCCTAGGACGTCAAAACTAAACTCGTATGTAAAATCAACAGAAGCTAGCACATCCGCATCGTCGTCGATCAGAACAGCAGGCAAACCACCTGAGAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAGTTCTCCAGAAGAAGCAACAGTTGATCCTGTTAATTGTGATAGAACCGGAAGCTTTTTACCTCCCAAGGAAAGGAGATTTTATGTCCTCATAGGAACACTTCTTTCAAGTCAGACTAAAGATCACGTTACTGGTGCGGCAGTAGAACGTCTTCGTTTAAATGGCCTTCTCACTCCTGAGGCCATTGATAAAGCCGATGAATCAACCATAAAGGAATTGATTTACCCAGTCGGGTTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCGAAAATCTGTCTCACGAAATATGAAGGTGACATTCCAAGGTCTTTGGAAGAGCTACTCTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATATAGCATGGAACGATGTTCAAGGGATCTGCGTAGACACACATGTGCATCGCATTTGCAATAGGCTTGGTTGGGTGACTAAACCAGGAACGAAACAGAAAACGTCTTCCCCTGAGGAAACTAGAGTAGCTCTGCAACAATGGCTTCCAAAGGAAGAATGGGTCGCTATTAACTTTCTTTTGGTAGGTTTCGGACAGAAGATATGCACACCGCTAAGACCACGCTGCGGAGTTTGTAGTATCAGTGAGCTTTGCCCTTCTGCCTTCAAAGAGACCCCAAGCAAAATATCCAAACTGAAGAAACCTATCAAAAGCAAGAAAGTTTAA
Protein:  
MKVKALMILTSSARAFSAMNRRMYSTRSISAESLTLPSDSNSNSNSNSESANGASGSETRVSPLRRKRLKQEVLDSSSSHKEMCGVLPDIEDLSYKKTNVSPRTSKLNSYVKSTEASTSASSSIRTAGKPPENWEKVLEGIRKMSSPEEATVDPVNCDRTGSFLPPKERRFYVLIGTLLSSQTKDHVTGAAVERLRLNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLTKYEGDIPRSLEELLSLPGVGPKIAHLVLHIAWNDVQGICVDTHVHRICNRLGWVTKPGTKQKTSSPEETRVALQQWLPKEEWVAINFLLVGFGQKICTPLRPRCGVCSISELCPSAFKETPSKISKLKKPIKSKKV